pytximport
Python Package
A Python package for importing bias-corrected data from RNA-seq experiments. A feature-rich Python port of tximport.
Places you can find my research
As an early-career researcher, I have been fortunate to have had my work featured in different journals and conferences. Here are some of the places my work has been published, and some of the conferences where I’ve spoken. Since most of my work is not yet published, please reach out to me if you would like to know more about my research. For a list of my projects as a founder, author and web developer, please visit the projects page.
Software packages
pyclustree
Python Package
A Python package for visualizing clustering results.
spatiomic
Python Package
To be released soon: A Python package for spatial proteomics analysis.
Published articles
Aortic Aneurysm and Dissection: Complement and Precision Medicine in Aortic Disease
AJP Heart and Circulatory Physiology, 2025
Review of the role of the complement system in aortic aneurysm and dissection and the opportunities for personalized medicine.
Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python
Bioinformatics, 2024
pytximport is a Python package for efficient (gene-)count estimation from transcript quantification files produced by pseudoalignment/quasi-mapping tools.
Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens
Nature Nanotechnology, 2023
Super-resolution microscopy with a wide-field microscopy using tissue expansion and the SRRF algorithm.
Some machine’s doin’that for you*–elektronische Triagesysteme in der Notaufnahme
Notfall+ Rettungsmedizin, 2021
Review of the latest research in the field of machine learning for medical triage.
Conferences
PathoPlex
European Spatial Biology Society, 2024
Talk introducing PathoPlex, a comprehensive toolbox for multiplexed spatial proteomics analysis of pathological specimens.
pytximport
scverse conference, 2024
Poster presentation on the pytximport package for importing bias-corrected data from RNA-seq experiments.
spatiomic
e:Med Meeting, 2023
Poster presentation on the spatiomic package for spatial proteomics analysis.